Research Question

Current research areas include

• Mass spectrometry-based quantitative and functional PTM proteomics and interactomics
• Post-translational modification (PTM) and protein-protein interaction networks in eukaryotic cell signaling and cycling
• Biotechnology and molecular systems biology

Representative Publications

1. Dai S., Liu S., Zhou C., Yu F., Zhu G., Zhang W., Deng H., Burlingame A., Yu W., Wang T., and Li N. (2023). Capturing the hierarchically assorted modules of protein–protein interactions in the organized nucleome. Mol. Plant. 16, 930–961.
2. Chen Zhou§, Shuaijian Dai§, Yuanqiao Lin, Sheng Lian, Xiaodan Fan, Ning Li* Weichuan Yu*  (2023) Exhaustive Cross-Linking Search with Protein Feedback. J. Proteome Res. 2023, 22, 1, 101–113.
3. Wang, K., Yang, Z., Qing, D., Ren, F., Liu, S., Zheng, Q., Liu, J., Zhang, W., Dai, C., Wu, M., Chehab, E.W., Braam, J.,Li, Ning*. (2018). Quantitative and functional posttranslational modification proteomics reveals that TREPH1 plays a role in plant touch-delayed bolting. Proceedings of the National Academy of Sciences. 115, E10265–E10274.
4. Liu, SC, Yu, FC, Yang Z, Wang T, Xiong, H Chang, C, Yu, WC*, and Ning Li* (2018) Establishment of dimethyl labelling-based quantitative acetylproteomics in Arabidopsis.Mol Cell Proteomics 17, 1010 -1027.
5. Li Y, Shu Y, Peng C, Zhu L, Guo G, Li, Ning* (2012) AQUIP: Absolute Quantitation of Isoforms of Post-translationally modified proteins in transgenic organism. Mol Cell Proteomics. 2012 11: 272-285.

Gordon Research Conference on Posttranslational Modification-Phosphosignaling.HKUST.
Hong Kong,China. July28-August 2nd, 2013

Croucher Advanced Study Institute (ASI) Symosium on “Functional Phosphoproteomics in Study of Plant Cell Signaling and Molecular Systems Biology”
January 3-7, 2011

The Annual Symposium of Hong Kong Proteomics Society, 2008!
17th November, 2008

organized by Prof. Ning Li